STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS45Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family. (579 aa)    
Predicted Functional Partners:
RBSN
Rabenosyn, RAB effector.
    
 0.999
STX16
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 
 0.982
RAB5A
RAB5A, member RAS oncogene family.
 
  
 0.934
MTO1
Mitochondrial tRNA translation optimization 1.
 
 
    0.900
ERGIC3
ERGIC and golgi 3.
 
 
    0.900
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.889
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.871
COG3
Component of oligomeric golgi complex 3.
     
 0.855
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.785
COG5
Component of oligomeric golgi complex 5.
     
 0.777
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.