STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECAP00000034220CSD_1 domain-containing protein. (289 aa)    
Predicted Functional Partners:
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
  
 0.699
HNRNPU
Heterogeneous nuclear ribonucleoprotein U.
   
 0.690
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
   
 0.680
SNRNP48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
    
 0.675
LSM14A
LSM14A mRNA processing body assembly factor.
   
 0.671
STAU1
Staufen double-stranded RNA binding protein 1.
    
 0.667
STAU2
Staufen double-stranded RNA binding protein 2.
    
 0.597
CPEB4
Cytoplasmic polyadenylation element binding protein 4.
   
 0.579
CPEB2
Cytoplasmic polyadenylation element binding protein 2.
   
 0.579
CPEB3
Cytoplasmic polyadenylation element binding protein 3.
   
 0.579
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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