NUP62CL protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NUP62CL

Nucleoporin 62 C-terminal like. (184 aa)

Predicted Functional Partners:

NUP54

0.958

RANBP2

0.927

NUP58

0.927

NUP35

0.872

NUP93

0.845

NUP205

0.826

NUP155

0.824

NUP107

0.818

NUP98

0.818

NUP133

0.817

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NUP107	NUP133	ENSECAP00000006311	ENSECAP00000018674	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 133.	0.999
NUP107	NUP155	ENSECAP00000006311	ENSECAP00000005879	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 155.	0.996
NUP107	NUP205	ENSECAP00000006311	ENSECAP00000034685	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 205.	0.997
NUP107	NUP35	ENSECAP00000006311	ENSECAP00000044328	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.962
NUP107	NUP54	ENSECAP00000006311	ENSECAP00000034415	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 54.	0.993
NUP107	NUP58	ENSECAP00000006311	ENSECAP00000023950	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 58.	0.893
NUP107	NUP62CL	ENSECAP00000006311	ENSECAP00000040738	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 62 C-terminal like.	0.818
NUP107	NUP93	ENSECAP00000006311	ENSECAP00000003997	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.998
NUP107	NUP98	ENSECAP00000006311	ENSECAP00000013468	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 98.	0.999
NUP107	RANBP2	ENSECAP00000006311	ENSECAP00000006914	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	RAN binding protein 2.	0.998
NUP133	NUP107	ENSECAP00000018674	ENSECAP00000006311	Nucleoporin 133.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
NUP133	NUP155	ENSECAP00000018674	ENSECAP00000005879	Nucleoporin 133.	Nucleoporin 155.	0.996
NUP133	NUP205	ENSECAP00000018674	ENSECAP00000034685	Nucleoporin 133.	Nucleoporin 205.	0.991
NUP133	NUP35	ENSECAP00000018674	ENSECAP00000044328	Nucleoporin 133.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.958
NUP133	NUP54	ENSECAP00000018674	ENSECAP00000034415	Nucleoporin 133.	Nucleoporin 54.	0.995
NUP133	NUP58	ENSECAP00000018674	ENSECAP00000023950	Nucleoporin 133.	Nucleoporin 58.	0.944
NUP133	NUP62CL	ENSECAP00000018674	ENSECAP00000040738	Nucleoporin 133.	Nucleoporin 62 C-terminal like.	0.817
NUP133	NUP93	ENSECAP00000018674	ENSECAP00000003997	Nucleoporin 133.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.997
NUP133	NUP98	ENSECAP00000018674	ENSECAP00000013468	Nucleoporin 133.	Nucleoporin 98.	0.999
NUP133	RANBP2	ENSECAP00000018674	ENSECAP00000006914	Nucleoporin 133.	RAN binding protein 2.	0.997