STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCO4Single-pass membrane protein with coiled-coil domains 4. (59 aa)    
Predicted Functional Partners:
TM6SF1
Transmembrane 6 superfamily member 1.
      
 0.482
LONRF1
LON peptidase N-terminal domain and ring finger 1.
      
 0.477
NAP1L3
Nucleosome assembly protein 1 like 3; Belongs to the nucleosome assembly protein (NAP) family.
      
 0.476
TMEM230
UPF0414 transmembrane protein C20orf30-like protein-like protein.
      
 0.471
ACOT13
Acyl-CoA thioesterase 13.
      
 0.471
EML1
EMAP like 1.
      
 0.470
GLT8D2
Glycosyltransferase 8 domain containing 2.
      
 0.470
GTF2H5
General transcription factor IIH subunit 5.
      
 0.470
NTAN1
N-terminal asparagine amidase.
      
 0.443
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.