STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNRNPA0Heterogeneous nuclear ribonucleoprotein A0. (301 aa)    
Predicted Functional Partners:
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.826
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.783
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 
 0.781
U2SURP
U2 snRNP associated SURP domain containing.
   
 
 0.775
SRSF2
RRM domain-containing protein.
  
 0.771
DDX24
DEAD-box helicase 24.
   
 0.747
NOP58
NOP58 ribonucleoprotein.
   
 
 0.700
ALYREF
Aly/REF export factor.
  
0.679
EXOSC3
Exosome component 3.
   
  
 0.679
UQCRQ
Ubiquinol-cytochrome c reductase complex III subunit VII.
   
 
 0.672
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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