STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE3DUbiquitin protein ligase E3D. (455 aa)    
Predicted Functional Partners:
RBBP6
RB binding protein 6, ubiquitin ligase.
    
 0.969
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 
 0.700
FCF1
FCF1 rRNA-processing protein.
      
 0.487
ARIH2
RBR-type E3 ubiquitin transferase.
      
 0.487
SPATA5
Spermatogenesis associated 5.
      
 0.487
NOL9
Nucleolar protein 9.
      
 0.485
SNAPC3
Small nuclear RNA activating complex polypeptide 3.
      
 0.483
CSTF3
Cleavage stimulation factor subunit 3.
      
 0.483
ZNF668
Zinc finger protein 668.
     
 0.482
ZBTB17
Zinc finger and BTB domain containing 17.
     
 0.478
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.