STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAMR1Peptidase domain containing associated with muscle regeneration 1; Belongs to the peptidase S1 family. (875 aa)    
Predicted Functional Partners:
RNF151
Ring finger protein 151.
      
 0.799
CLPTM1L
CLPTM1 like.
    
 
 0.751
SMIM12
Small integral membrane protein 12.
    
 0.598
ENDOU
Endonuclease, poly(U) specific.
      
 0.591
NELL1
Neural EGFL like 1.
   
 0.588
LRRC40
Leucine rich repeat containing 40.
    
 0.583
SH3D21
SH3 domain containing 21.
      
 0.576
TCAIM
T cell activation inhibitor, mitochondrial.
      
 0.569
SHISA4
Shisa family member 4.
      
 0.569
BEND7
BEN domain containing 7.
      
 0.568
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.