STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOPXHomeobox domain-containing protein. (73 aa)    
Predicted Functional Partners:
SFTPC
Surfactant protein C.
      
 0.872
FAM107A
Family with sequence similarity 107 member A.
      
 0.802
LRIG1
Leucine rich repeats and immunoglobulin like domains 1.
    
 
 0.733
SATB2
DNA-binding protein SATB.
    
 
 0.705
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
   
 
 0.704
SOX9
SRY-box 9.
      
 0.682
ASCL2
BHLH domain-containing protein.
    
 0.625
PTPRZ1
Protein tyrosine phosphatase receptor type Z1.
      
 0.623
PAX6
Paired box 6.
    
 
 0.622
OLFM4
Olfactomedin 4.
      
 0.570
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.