RABEP2 protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RABEP2

Rabaptin, RAB GTPase binding effector protein 2. (569 aa)

Predicted Functional Partners:

RABGEF1

0.997

MTA3

0.812

ANKRD27

0.754

GAPVD1

0.749

ZFAND4

0.737

KDM8

0.707

ZFAND3

0.703

ZFAND6

0.703

ZFAND5

0.703

GGA2

0.687

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD27	GGA2	ENSECAP00000017468	ENSECAP00000017889	Ankyrin repeat domain 27.	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	0.451
ANKRD27	RABEP2	ENSECAP00000017468	ENSECAP00000044113	Ankyrin repeat domain 27.	Rabaptin, RAB GTPase binding effector protein 2.	0.754
ANKRD27	ZFAND4	ENSECAP00000017468	ENSECAP00000005825	Ankyrin repeat domain 27.	Zinc finger AN1-type containing 4.	0.457
GAPVD1	GGA2	ENSECAP00000041424	ENSECAP00000017889	GTPase activating protein and VPS9 domains 1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	0.451
GAPVD1	RABEP2	ENSECAP00000041424	ENSECAP00000044113	GTPase activating protein and VPS9 domains 1.	Rabaptin, RAB GTPase binding effector protein 2.	0.749
GAPVD1	RABGEF1	ENSECAP00000041424	ENSECAP00000015485	GTPase activating protein and VPS9 domains 1.	RAB guanine nucleotide exchange factor 1.	0.526
GAPVD1	ZFAND4	ENSECAP00000041424	ENSECAP00000005825	GTPase activating protein and VPS9 domains 1.	Zinc finger AN1-type containing 4.	0.452
GGA2	ANKRD27	ENSECAP00000017889	ENSECAP00000017468	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Ankyrin repeat domain 27.	0.451
GGA2	GAPVD1	ENSECAP00000017889	ENSECAP00000041424	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	GTPase activating protein and VPS9 domains 1.	0.451
GGA2	RABEP2	ENSECAP00000017889	ENSECAP00000044113	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Rabaptin, RAB GTPase binding effector protein 2.	0.687
GGA2	RABGEF1	ENSECAP00000017889	ENSECAP00000015485	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	RAB guanine nucleotide exchange factor 1.	0.803
GGA2	ZFAND3	ENSECAP00000017889	ENSECAP00000014885	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Zinc finger AN1-type containing 3.	0.421
GGA2	ZFAND4	ENSECAP00000017889	ENSECAP00000005825	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Zinc finger AN1-type containing 4.	0.485
GGA2	ZFAND5	ENSECAP00000017889	ENSECAP00000021229	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Zinc finger AN1-type containing 5.	0.421
GGA2	ZFAND6	ENSECAP00000017889	ENSECAP00000015742	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Zinc finger AN1-type containing 6.	0.421
KDM8	MTA3	ENSECAP00000000474	ENSECAP00000049242	Lysine demethylase 8.	Metastasis associated 1 family member 3.	0.582
KDM8	RABEP2	ENSECAP00000000474	ENSECAP00000044113	Lysine demethylase 8.	Rabaptin, RAB GTPase binding effector protein 2.	0.707
MTA3	KDM8	ENSECAP00000049242	ENSECAP00000000474	Metastasis associated 1 family member 3.	Lysine demethylase 8.	0.582
MTA3	RABEP2	ENSECAP00000049242	ENSECAP00000044113	Metastasis associated 1 family member 3.	Rabaptin, RAB GTPase binding effector protein 2.	0.812
RABEP2	ANKRD27	ENSECAP00000044113	ENSECAP00000017468	Rabaptin, RAB GTPase binding effector protein 2.	Ankyrin repeat domain 27.	0.754