STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRFN5Leucine rich repeat and fibronectin type III domain containing 5. (775 aa)    
Predicted Functional Partners:
PTPRD
Protein tyrosine phosphatase receptor type D.
    
0.983
MDGA2
MAM domain containing glycosylphosphatidylinositol anchor 2.
   
 0.761
RABEPK
Rab9 effector protein with kelch motifs.
   
  
 0.728
TRAPPC6B
Trafficking protein particle complex 6B.
   
  
 0.702
PDZRN4
PDZ domain containing ring finger 4.
   
 0.694
GRAMD1B
GRAM domain containing 1B.
     
 0.692
PNN
Pinin, desmosome associated protein.
      
 0.679
RND2
Rho family GTPase 2.
   
 0.673
ANO4
Anoctamin.
      
 0.654
PTPRF
Protein tyrosine phosphatase receptor type F.
    
 0.636
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.