CADPS protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CADPS

Calcium dependent secretion activator. (1432 aa)

Predicted Functional Partners:

CPNE6

0.641

SCAMP5

0.629

BSN

0.592

ATP6V1G2

0.576

PLCH2

0.561

SYNGR3

0.549

CELF4

0.547

CNTNAP1

0.542

STXBP1

0.542

SYT1

0.540

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V1G2	BSN	ENSECAP00000049273	ENSECAP00000006337	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Bassoon presynaptic cytomatrix protein.	0.575
ATP6V1G2	CADPS	ENSECAP00000049273	ENSECAP00000044568	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Calcium dependent secretion activator.	0.576
ATP6V1G2	CNTNAP1	ENSECAP00000049273	ENSECAP00000021874	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Contactin associated protein 1.	0.545
ATP6V1G2	CPNE6	ENSECAP00000049273	ENSECAP00000028691	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Copine 6.	0.660
ATP6V1G2	SCAMP5	ENSECAP00000049273	ENSECAP00000018581	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Secretory carrier-associated membrane protein.	0.631
ATP6V1G2	SYNGR3	ENSECAP00000049273	ENSECAP00000012890	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Synaptogyrin.	0.520
BSN	ATP6V1G2	ENSECAP00000006337	ENSECAP00000049273	Bassoon presynaptic cytomatrix protein.	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.575
BSN	CADPS	ENSECAP00000006337	ENSECAP00000044568	Bassoon presynaptic cytomatrix protein.	Calcium dependent secretion activator.	0.592
BSN	CNTNAP1	ENSECAP00000006337	ENSECAP00000021874	Bassoon presynaptic cytomatrix protein.	Contactin associated protein 1.	0.529
BSN	CPNE6	ENSECAP00000006337	ENSECAP00000028691	Bassoon presynaptic cytomatrix protein.	Copine 6.	0.660
BSN	SCAMP5	ENSECAP00000006337	ENSECAP00000018581	Bassoon presynaptic cytomatrix protein.	Secretory carrier-associated membrane protein.	0.589
BSN	STXBP1	ENSECAP00000006337	ENSECAP00000048534	Bassoon presynaptic cytomatrix protein.	Syntaxin binding protein 1; Belongs to the STXBP/unc-18/SEC1 family.	0.403
BSN	SYNGR3	ENSECAP00000006337	ENSECAP00000012890	Bassoon presynaptic cytomatrix protein.	Synaptogyrin.	0.499
BSN	SYT1	ENSECAP00000006337	ENSECAP00000010875	Bassoon presynaptic cytomatrix protein.	Synaptotagmin 1.	0.402
CADPS	ATP6V1G2	ENSECAP00000044568	ENSECAP00000049273	Calcium dependent secretion activator.	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.576
CADPS	BSN	ENSECAP00000044568	ENSECAP00000006337	Calcium dependent secretion activator.	Bassoon presynaptic cytomatrix protein.	0.592
CADPS	CELF4	ENSECAP00000044568	ENSECAP00000031441	Calcium dependent secretion activator.	CUGBP Elav-like family member 4.	0.547
CADPS	CNTNAP1	ENSECAP00000044568	ENSECAP00000021874	Calcium dependent secretion activator.	Contactin associated protein 1.	0.542
CADPS	CPNE6	ENSECAP00000044568	ENSECAP00000028691	Calcium dependent secretion activator.	Copine 6.	0.641
CADPS	PLCH2	ENSECAP00000044568	ENSECAP00000032180	Calcium dependent secretion activator.	Phosphoinositide phospholipase C.	0.561