STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAMPLimbic system associated membrane protein. (355 aa)    
Predicted Functional Partners:
ISLR2
Immunoglobulin superfamily containing leucine rich repeat 2.
    
 0.668
FAM171A2
Family with sequence similarity 171 member A2.
      
 0.654
SNTN
Synaptoporin.
   
 
 0.638
PTPRM
Protein tyrosine phosphatase receptor type M.
  
 0.623
CDH9
Cadherin 9; Cadherins are calcium-dependent cell adhesion proteins.
   
 0.591
LOC111772277
Complement C1q-like protein 3.
    
 0.585
LOC111771764
Complement C1q-like protein 3.
    
 0.585
C1QL3
C1q domain-containing protein.
    
 0.581
HPCAL4
Hippocalcin like 4.
   
 
 0.577
NECTIN3
Nectin cell adhesion molecule 3.
    
 0.574
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.