STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM5Zinc finger protein. (630 aa)    
Predicted Functional Partners:
FKBP14
Peptidylprolyl isomerase.
   
 
 0.720
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
      
 0.650
MLF1
Myeloid leukemia factor 1.
    
 
 0.650
B4GALT7
Beta-1,4-galactosyltransferase 7.
   
  
 0.638
SLC39A13
Solute carrier family 39 member 13.
      
 0.636
TNXB
Tenascin XB.
    
 0.635
PRDM8
PR/SET domain 8.
   
 
 0.568
PDZD2
PDZ domain containing 2.
    
 
 0.566
RGCC
Regulator of cell cycle.
      
 0.565
NR2E1
Nuclear receptor subfamily 2 group E member 1.
   
 0.561
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.