STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBBP6RB binding protein 6, ubiquitin ligase. (1794 aa)    
Predicted Functional Partners:
WDR33
WD repeat domain 33.
   
 
 0.994
SYMPK
Symplekin.
    
 
 0.984
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 
 0.982
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 
 0.978
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 
 0.978
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 
 0.977
UBE3D
Ubiquitin protein ligase E3D.
    
 0.969
FIP1L1
Factor interacting with PAPOLA and CPSF1.
    
 
 0.956
WDR82
WD repeat domain 82.
    
 
 0.954
PAPOLA
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 
 0.944
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.