STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylaC_1Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)    
Predicted Functional Partners:
sigM_2
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.689
sigW_2
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.674
sigR
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.667
sigW_1
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.663
sigX_1
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.620
sigW_3
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.548
sigD_1
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.507
sigE_2
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.504
MFFC18_04040
Unannotated protein.
       0.497
sigV
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.478
Your Current Organism:
Mariniblastus fucicola
NCBI taxonomy Id: 980251
Other names: DSM 26290, LMG 29748, LMG:29748, M. fucicola, Mariniblastus fucicola Lage et al. 2017, Planctomyces sp. FC18, Planctomycetaceae bacterium FC18, strain FC18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.