STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000218485_01498Unannotated protein. (302 aa)    
Predicted Functional Partners:
GCA_000218485_00203
Unannotated protein.
 
 
 0.865
GCA_000218485_02478
Unannotated protein.
   
  0.817
GCA_000218485_01497
Unannotated protein.
 
   
 0.807
GCA_000218485_02567
Unannotated protein.
 
  
 0.730
GCA_000218485_03328
Unannotated protein.
     
 0.700
GCA_000218485_02310
Unannotated protein.
  
     0.698
GCA_000218485_01779
Unannotated protein.
 
     0.695
GCA_000218485_03341
Unannotated protein.
  
 
 0.689
GCA_000218485_01202
Unannotated protein.
    
 0.662
GCA_000218485_01496
Unannotated protein.
 
   
 0.657
Your Current Organism:
Aquimarina agarivorans
NCBI taxonomy Id: 980584
Other names: A. agarivorans, ATCC BAA-2612, Aquimarina agarivorans Zhou et al. 2015, CICC 10835, Flavobacteriaceae bacterium HQM9, strain HQM9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.