STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000218485_03288Unannotated protein. (196 aa)    
Predicted Functional Partners:
GCA_000218485_03285
Unannotated protein.
       0.752
GCA_000218485_03286
Unannotated protein.
       0.752
GCA_000218485_03287
Unannotated protein.
       0.752
GCA_000218485_03289
Unannotated protein.
       0.746
GCA_000218485_03290
Unannotated protein.
       0.746
GCA_000218485_03291
Unannotated protein.
       0.445
GCA_000218485_03292
Unannotated protein.
       0.445
GCA_000218485_03293
Unannotated protein.
       0.445
Your Current Organism:
Aquimarina agarivorans
NCBI taxonomy Id: 980584
Other names: A. agarivorans, ATCC BAA-2612, Aquimarina agarivorans Zhou et al. 2015, CICC 10835, Flavobacteriaceae bacterium HQM9, strain HQM9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.