STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEP11157.1CRP/FNR family transcriptional regulator, cyclic AMP receptor protein; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase. (366 aa)    
Predicted Functional Partners:
AEP11628.1
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
  
  
  0.971
AEP13816.1
Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
 0.840
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.741
AEP12234.1
DNA-directed RNA polymerase subunit alpha.
    
   0.727
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.656
AEP11550.1
preQ(0) biosynthesis protein QueD.
    
  0.625
AEP12817.1
6-pyruvoyl-tetrahydropterin synthase.
    
  0.625
AEP11156.1
Nucleoside-diphosphate-sugar epimerase.
  
    0.622
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.621
AEP13742.1
Ankyrin repeat protein.
  
 0.494
Your Current Organism:
Chloracidobacterium thermophilum
NCBI taxonomy Id: 981222
Other names: C. thermophilum B, Candidatus Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum str. B, Chloracidobacterium thermophilum strain B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.