STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEP11907.1Sigma-54 interaction domain protein. (322 aa)    
Predicted Functional Partners:
AEP11958.1
Response regulator.
 
      0.894
AEP12138.1
RNA polymerase sigma-54 factor.
 
   
 0.786
AEP11908.1
Two component, sigma54 specific, transcriptional regulator, Fis family.
 
    
0.746
AEP13730.1
Signal transduction histidine kinase.
  
 
 0.597
AEP13819.1
PAS domain S-box.
 
 
 0.535
AEP11909.1
Putative rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.510
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.481
AEP10814.1
PAS domain S-box.
  
 
 0.413
AEP13029.1
Type III secretion apparatus protein, HrpE/YscL family.
  
  
 0.413
AEP13534.1
Type III secretion system apparatus protein YscQ/HrcQ.
  
  
 0.412
Your Current Organism:
Chloracidobacterium thermophilum
NCBI taxonomy Id: 981222
Other names: C. thermophilum B, Candidatus Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum str. B, Chloracidobacterium thermophilum strain B
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