STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEP12285.1Type IV pilus assembly protein PilM. (359 aa)    
Predicted Functional Partners:
AEP12284.1
Tfp pilus assembly protein PilN.
  
 
 0.988
AEP12281.1
Type II secretory pathway, component HofQ.
 
 
 0.948
AEP12283.1
Tfp pilus assembly protein PilO.
 
 
 0.934
AEP12445.1
Type II secretory pathway, component PulF.
 
 
 
 0.799
AEP11275.1
Type II secretory pathway, prepilin signal peptidase PulO-like peptidase.
 
  
 0.718
AEP12444.1
Pilus retraction protein PilT.
 
   
 0.716
AEP10849.1
Pilus retraction protein PilT.
 
   
 0.692
AEP12443.1
Type IV-A pilus assembly ATPase PilB.
 
 
 0.672
AEP13746.1
LysM domain protein.
    
   0.669
AEP11538.1
Putative GTPase.
  
   
 0.651
Your Current Organism:
Chloracidobacterium thermophilum
NCBI taxonomy Id: 981222
Other names: C. thermophilum B, Candidatus Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum str. B, Chloracidobacterium thermophilum strain B
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