STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEP12434.1RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (248 aa)    
Predicted Functional Partners:
AEP12432.1
Molybdopterin converting factor, large subunit.
       0.773
AEP12433.1
Molybdopterin converting factor, small subunit.
       0.773
prmA
Ribosomal protein L11 methylase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
  
 0.770
AEP12438.1
Putative membrane-associated protein.
       0.735
AEP12435.1
ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.714
AEP12436.1
ABC-type uncharacterized transport systems, ATPase component.
       0.714
AEP12437.1
Putative ABC-type transport system, periplasmic component/surface lipoprotein.
       0.714
AEP12439.1
Hypothetical protein.
       0.672
AEP12440.1
Hypothetical protein.
       0.672
AEP11780.1
Putative RNA methylase.
  
  
 0.654
Your Current Organism:
Chloracidobacterium thermophilum
NCBI taxonomy Id: 981222
Other names: C. thermophilum B, Candidatus Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum str. B, Chloracidobacterium thermophilum strain B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.