STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEP12915.1Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (125 aa)    
Predicted Functional Partners:
AEP13730.1
Signal transduction histidine kinase.
 
 
 0.961
AEP12190.1
PAS domain S-box.
 
 
 0.960
AEP11569.1
PAS domain S-box.
 
 
 0.885
AEP12945.1
Diguanylate cyclase (GGDEF) domain protein.
 
 
 0.877
AEP11216.1
PAS domain S-box.
 
 
 0.873
AEP11997.1
PAS domain S-box.
 
 
 0.853
AEP10811.1
PAS domain S-box.
 
 
 0.852
AEP12914.1
Penicillin-binding protein-related factor A, putative recombinase; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation. Belongs to the RecU family.
       0.773
AEP12913.1
Putative phosphohydrolase.
       0.762
AEP12890.1
PAS domain S-box.
 
 
 0.686
Your Current Organism:
Chloracidobacterium thermophilum
NCBI taxonomy Id: 981222
Other names: C. thermophilum B, Candidatus Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum str. B, Chloracidobacterium thermophilum strain B
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