STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEP13550.1Flagellar biosynthetic protein FliR/type III secretion protein SpaR/YscT/HrcT. (280 aa)    
Predicted Functional Partners:
AEP13309.1
Type III secretion protein, YscU/HrpY family.
 
 0.999
AEP13536.1
Type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.999
fliQ
Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
 
 0.999
AEP13655.1
Type III secretion system ATPase, FliI/YscN.
 
  
 0.962
AEP13534.1
Type III secretion system apparatus protein YscQ/HrcQ.
 
 
 0.923
AEP13646.1
Hypothetical protein.
  
 
 0.918
AEP13535.1
Flagellar biogenesis protein.
  
  
 0.893
AEP13793.1
RNA polymerase sigma factor, sigma-70 family.
 
  
 0.893
AEP13029.1
Type III secretion apparatus protein, HrpE/YscL family.
 
  
 0.874
AEP11268.1
Methylase of chemotaxis methyl-accepting protein.
 
  
 0.800
Your Current Organism:
Chloracidobacterium thermophilum
NCBI taxonomy Id: 981222
Other names: C. thermophilum B, Candidatus Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum str. B, Chloracidobacterium thermophilum strain B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.