STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBR1Ubiquitin protein ligase E3 component n-recognin 1. (1721 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.993
UBE2A
Ubiquitin conjugating enzyme E2 A.
    
 
 0.867
UBE2B
Ubiquitin conjugating enzyme E2 B.
    
 
 0.867
UBC
Ubiquitin C.
   
 0.863
ENSPCAP00000001872
annotation not available
    
 
 0.757
LTN1
Listerin E3 ubiquitin protein ligase 1.
   
 0.750
ATAD2B
ATPase family AAA domain containing 2B.
   
 
 0.725
PHIP
Pleckstrin homology domain interacting protein.
   
   0.714
ZFAND4
Zinc finger AN1-type containing 4.
   
 0.709
MARCHF6
Membrane associated ring-CH-type finger 6.
    
 
 0.704
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.