Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF114Ring finger protein 114. (228 aa)    
Predicted Functional Partners:
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
    
 0.959
UBC
Ubiquitin C.
    
  0.938
DCAF11
DDB1 and CUL4 associated factor 11.
    
 0.918
RNF166
Ring finger protein 166.
    
   0.913
TIPARP
TCDD inducible poly(ADP-ribose) polymerase.
    
   0.896
FEM1B
Fem-1 homolog B.
    
 0.864
ENSPCAP00000001088
annotation not available
    
  0.753
UBE2D3
Ubiquitin conjugating enzyme E2 D3.
    
  0.753
TNFAIP3
TNF alpha induced protein 3.
    
 
 0.750
TNKS
Tankyrase.
    
  0.748
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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