TLCD3B protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

TLCD3B

TLC domain containing 3B. (275 aa)

Predicted Functional Partners:

ENSPCAP00000001197

0.772

ENSPCAP00000010334

0.725

SEZ6L2

0.691

SPHK2

0.670

PPP4C

0.668

TCEA2

0.668

INO80E

0.629

ENSPCAP00000009912

0.610

SPTLC1

0.607

EPB41L4A

0.590

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000001197	ENSPCAP00000010334	ENSPCAP00000001197	ENSPCAP00000010334	annotation not available	annotation not available	0.725
ENSPCAP00000001197	TLCD3B	ENSPCAP00000001197	ENSPCAP00000000048	annotation not available	TLC domain containing 3B.	0.772
ENSPCAP00000009912	INO80E	ENSPCAP00000009912	ENSPCAP00000000035	annotation not available	INO80 complex subunit E.	0.587
ENSPCAP00000009912	PPP4C	ENSPCAP00000009912	ENSPCAP00000000056	annotation not available	Protein phosphatase 4 catalytic subunit.	0.550
ENSPCAP00000009912	SEZ6L2	ENSPCAP00000009912	ENSPCAP00000005363	annotation not available	Seizure related 6 homolog like 2.	0.636
ENSPCAP00000009912	TLCD3B	ENSPCAP00000009912	ENSPCAP00000000048	annotation not available	TLC domain containing 3B.	0.610
ENSPCAP00000010334	ENSPCAP00000001197	ENSPCAP00000010334	ENSPCAP00000001197	annotation not available	annotation not available	0.725
ENSPCAP00000010334	PPP4C	ENSPCAP00000010334	ENSPCAP00000000056	annotation not available	Protein phosphatase 4 catalytic subunit.	0.451
ENSPCAP00000010334	SEZ6L2	ENSPCAP00000010334	ENSPCAP00000005363	annotation not available	Seizure related 6 homolog like 2.	0.578
ENSPCAP00000010334	TLCD3B	ENSPCAP00000010334	ENSPCAP00000000048	annotation not available	TLC domain containing 3B.	0.725
EPB41L4A	TCEA2	ENSPCAP00000013332	ENSPCAP00000014647	Erythrocyte membrane protein band 4.1 like 4A.	Transcription elongation factor A2.	0.592
EPB41L4A	TLCD3B	ENSPCAP00000013332	ENSPCAP00000000048	Erythrocyte membrane protein band 4.1 like 4A.	TLC domain containing 3B.	0.590
INO80E	ENSPCAP00000009912	ENSPCAP00000000035	ENSPCAP00000009912	INO80 complex subunit E.	annotation not available	0.587
INO80E	PPP4C	ENSPCAP00000000035	ENSPCAP00000000056	INO80 complex subunit E.	Protein phosphatase 4 catalytic subunit.	0.620
INO80E	SEZ6L2	ENSPCAP00000000035	ENSPCAP00000005363	INO80 complex subunit E.	Seizure related 6 homolog like 2.	0.660
INO80E	TLCD3B	ENSPCAP00000000035	ENSPCAP00000000048	INO80 complex subunit E.	TLC domain containing 3B.	0.629
PPP4C	ENSPCAP00000009912	ENSPCAP00000000056	ENSPCAP00000009912	Protein phosphatase 4 catalytic subunit.	annotation not available	0.550
PPP4C	ENSPCAP00000010334	ENSPCAP00000000056	ENSPCAP00000010334	Protein phosphatase 4 catalytic subunit.	annotation not available	0.451
PPP4C	INO80E	ENSPCAP00000000056	ENSPCAP00000000035	Protein phosphatase 4 catalytic subunit.	INO80 complex subunit E.	0.620
PPP4C	SEZ6L2	ENSPCAP00000000056	ENSPCAP00000005363	Protein phosphatase 4 catalytic subunit.	Seizure related 6 homolog like 2.	0.663