STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COILCoilin. (543 aa)    
Predicted Functional Partners:
ENSPCAP00000003902
annotation not available
    
 0.970
PSME3
Proteasome activator subunit 3.
    
 
 0.957
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
   
 
 0.953
WRAP53
WD repeat containing antisense to TP53.
    
 0.904
ATXN1
Ataxin 1.
    
 
 0.844
POLR2L
RNA polymerase II subunit L.
    
 0.829
PRPF4
pre-mRNA processing factor 4.
   
 0.824
VRK1
VRK serine/threonine kinase 1.
    
 
 0.785
PDLIM5
PDZ and LIM domain 5.
    
   0.771
NCOR1
Nuclear receptor corepressor 1.
    
 0.766
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.