STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1orf158Chromosome 1 open reading frame 158. (194 aa)    
Predicted Functional Partners:
WDR90
WD repeat domain 90.
    
   0.918
EFHB
EF-hand domain family member B.
   
   0.880
C1orf194
Chromosome 1 open reading frame 194.
   
   0.864
SPAG8
Sperm associated antigen 8.
    
   0.852
C9orf135
Chromosome 9 open reading frame 135.
    
   0.852
EFCAB6
EF-hand calcium binding domain 6.
   
   0.712
C5orf49
Chromosome 5 open reading frame 49.
   
   0.697
ENSPCAP00000007308
annotation not available
   
   0.694
EFHC1
EF-hand domain containing 1.
   
   0.694
PACRG
Parkin coregulated.
   
   0.691
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.