STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CLP1Cleavage and polyadenylation factor I subunit 1. (424 aa)    
Predicted Functional Partners:
TSEN54
tRNA splicing endonuclease subunit 54.
    
 0.998
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.998
TSEN34
tRNA splicing endonuclease subunit 34.
    
 0.998
TSEN2
tRNA splicing endonuclease subunit 2.
    
 0.997
ENSPCAP00000007547
annotation not available
    
 0.996
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.994
CSTF2T
Cleavage stimulation factor subunit 2 tau variant.
   
 0.992
CPSF1
Cleavage and polyadenylation specific factor 1.
   
 0.990
TSEN15
tRNA splicing endonuclease subunit 15.
    
 0.989
ENSPCAP00000007952
annotation not available
    
 0.987
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.