TRABD protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

TRABD

TraB domain containing. (368 aa)

Predicted Functional Partners:

COPZ2

0.912

WDYHV1

0.912

TOMM40

0.910

ENSPCAP00000011600

0.900

TOMM5

0.896

MUL1

0.896

TOMM7

0.895

QTRT1

0.877

NUDT22

0.876

ENSPCAP00000006053

0.779

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COPZ2	ENSPCAP00000006053	ENSPCAP00000002184	ENSPCAP00000006053	Coatomer protein complex subunit zeta 2.	annotation not available	0.871
COPZ2	NUDT22	ENSPCAP00000002184	ENSPCAP00000000733	Coatomer protein complex subunit zeta 2.	Nudix hydrolase 22.	0.909
COPZ2	QTRT1	ENSPCAP00000002184	ENSPCAP00000000713	Coatomer protein complex subunit zeta 2.	Queuine tRNA-ribosyltransferase catalytic subunit 1.	0.412
COPZ2	TRABD	ENSPCAP00000002184	ENSPCAP00000001070	Coatomer protein complex subunit zeta 2.	TraB domain containing.	0.912
COPZ2	WDYHV1	ENSPCAP00000002184	ENSPCAP00000003573	Coatomer protein complex subunit zeta 2.	WDYHV motif containing 1.	0.853
ENSPCAP00000006053	COPZ2	ENSPCAP00000006053	ENSPCAP00000002184	annotation not available	Coatomer protein complex subunit zeta 2.	0.871
ENSPCAP00000006053	NUDT22	ENSPCAP00000006053	ENSPCAP00000000733	annotation not available	Nudix hydrolase 22.	0.692
ENSPCAP00000006053	QTRT1	ENSPCAP00000006053	ENSPCAP00000000713	annotation not available	Queuine tRNA-ribosyltransferase catalytic subunit 1.	0.628
ENSPCAP00000006053	TRABD	ENSPCAP00000006053	ENSPCAP00000001070	annotation not available	TraB domain containing.	0.779
ENSPCAP00000006053	WDYHV1	ENSPCAP00000006053	ENSPCAP00000003573	annotation not available	WDYHV motif containing 1.	0.665
ENSPCAP00000011600	MUL1	ENSPCAP00000011600	ENSPCAP00000005955	annotation not available	Mitochondrial E3 ubiquitin protein ligase 1.	0.784
ENSPCAP00000011600	TOMM40	ENSPCAP00000011600	ENSPCAP00000009759	annotation not available	Translocase of outer mitochondrial membrane 40.	0.999
ENSPCAP00000011600	TOMM5	ENSPCAP00000011600	ENSPCAP00000004742	annotation not available	Translocase of outer mitochondrial membrane 5.	0.997
ENSPCAP00000011600	TOMM7	ENSPCAP00000011600	ENSPCAP00000008075	annotation not available	Translocase of outer mitochondrial membrane 7.	0.999
ENSPCAP00000011600	TRABD	ENSPCAP00000011600	ENSPCAP00000001070	annotation not available	TraB domain containing.	0.900
MUL1	ENSPCAP00000011600	ENSPCAP00000005955	ENSPCAP00000011600	Mitochondrial E3 ubiquitin protein ligase 1.	annotation not available	0.784
MUL1	TOMM40	ENSPCAP00000005955	ENSPCAP00000009759	Mitochondrial E3 ubiquitin protein ligase 1.	Translocase of outer mitochondrial membrane 40.	0.797
MUL1	TOMM5	ENSPCAP00000005955	ENSPCAP00000004742	Mitochondrial E3 ubiquitin protein ligase 1.	Translocase of outer mitochondrial membrane 5.	0.899
MUL1	TOMM7	ENSPCAP00000005955	ENSPCAP00000008075	Mitochondrial E3 ubiquitin protein ligase 1.	Translocase of outer mitochondrial membrane 7.	0.899
MUL1	TRABD	ENSPCAP00000005955	ENSPCAP00000001070	Mitochondrial E3 ubiquitin protein ligase 1.	TraB domain containing.	0.896