SELENOO protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SELENOO

Selenoprotein O. (656 aa)

Predicted Functional Partners:

SELENOT

0.854

ENSPCAP00000007187

0.850

SELENOS

0.847

SELENOF

0.769

SELENOM

0.749

ENSPCAP00000002666

0.718

ENSPCAP00000001849

0.698

ENSPCAP00000001257

0.692

ENSPCAP00000012907

0.692

PGPEP1L

0.688

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000001257	ENSPCAP00000001849	ENSPCAP00000001257	ENSPCAP00000001849	annotation not available	annotation not available	0.571
ENSPCAP00000001257	ENSPCAP00000002666	ENSPCAP00000001257	ENSPCAP00000002666	annotation not available	annotation not available	0.598
ENSPCAP00000001257	ENSPCAP00000007187	ENSPCAP00000001257	ENSPCAP00000007187	annotation not available	annotation not available	0.692
ENSPCAP00000001257	ENSPCAP00000012907	ENSPCAP00000001257	ENSPCAP00000012907	annotation not available	annotation not available	0.587
ENSPCAP00000001257	SELENOF	ENSPCAP00000001257	ENSPCAP00000013944	annotation not available	Selenoprotein F.	0.697
ENSPCAP00000001257	SELENOM	ENSPCAP00000001257	ENSPCAP00000010816	annotation not available	Selenoprotein M.	0.592
ENSPCAP00000001257	SELENOO	ENSPCAP00000001257	ENSPCAP00000001135	annotation not available	Selenoprotein O.	0.692
ENSPCAP00000001257	SELENOS	ENSPCAP00000001257	ENSPCAP00000007301	annotation not available	Selenoprotein S.	0.692
ENSPCAP00000001257	SELENOT	ENSPCAP00000001257	ENSPCAP00000013390	annotation not available	Selenoprotein T.	0.692
ENSPCAP00000001849	ENSPCAP00000001257	ENSPCAP00000001849	ENSPCAP00000001257	annotation not available	annotation not available	0.571
ENSPCAP00000001849	ENSPCAP00000002666	ENSPCAP00000001849	ENSPCAP00000002666	annotation not available	annotation not available	0.732
ENSPCAP00000001849	ENSPCAP00000007187	ENSPCAP00000001849	ENSPCAP00000007187	annotation not available	annotation not available	0.692
ENSPCAP00000001849	ENSPCAP00000012907	ENSPCAP00000001849	ENSPCAP00000012907	annotation not available	annotation not available	0.578
ENSPCAP00000001849	SELENOF	ENSPCAP00000001849	ENSPCAP00000013944	annotation not available	Selenoprotein F.	0.692
ENSPCAP00000001849	SELENOM	ENSPCAP00000001849	ENSPCAP00000010816	annotation not available	Selenoprotein M.	0.577
ENSPCAP00000001849	SELENOO	ENSPCAP00000001849	ENSPCAP00000001135	annotation not available	Selenoprotein O.	0.698
ENSPCAP00000001849	SELENOS	ENSPCAP00000001849	ENSPCAP00000007301	annotation not available	Selenoprotein S.	0.689
ENSPCAP00000001849	SELENOT	ENSPCAP00000001849	ENSPCAP00000013390	annotation not available	Selenoprotein T.	0.692
ENSPCAP00000002666	ENSPCAP00000001257	ENSPCAP00000002666	ENSPCAP00000001257	annotation not available	annotation not available	0.598
ENSPCAP00000002666	ENSPCAP00000001849	ENSPCAP00000002666	ENSPCAP00000001849	annotation not available	annotation not available	0.732