Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NR1D1Nuclear receptor subfamily 1 group D member 1. (609 aa)    
Predicted Functional Partners:
ARNTL
Aryl hydrocarbon receptor nuclear translocator like.
    
 0.992
NCOR1
Nuclear receptor corepressor 1.
    
 0.987
CRY1
Cryptochrome circadian regulator 1.
     
 0.984
CRY2
Cryptochrome circadian regulator 2.
     
 0.974
NFIL3
Nuclear factor, interleukin 3 regulated.
   
 0.954
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
    
 0.952
NCOR2
Nuclear receptor corepressor 2.
    
 0.950
NR1D2
Nuclear receptor subfamily 1 group D member 2.
   
 0.937
CLOCK
Clock circadian regulator.
    
 0.932
NPAS2
Neuronal PAS domain protein 2.
    
 0.932
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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