Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
PTP4A1Protein tyrosine phosphatase 4A1. (171 aa)    
Predicted Functional Partners:
RABGGTB
Rab geranylgeranyltransferase subunit beta.
    
  0.967
AUP1
AUP1 lipid droplet regulating VLDL assembly factor.
    
   0.835
CNNM2
Cyclin and CBS domain divalent metal cation transport mediator 2.
    
 
 0.704
CNNM3
Cyclin and CBS domain divalent metal cation transport mediator 3.
    
 
 0.704
CNNM4
Cyclin and CBS domain divalent metal cation transport mediator 4.
    
 
 0.704
ENSPCAP00000000463
annotation not available
    
   0.645
TAF12
TATA-box binding protein associated factor 12.
     
 0.644
ALDH18A1
Aldehyde dehydrogenase 18 family member A1.
     
  0.580
CHM
CHM Rab escort protein.
     
  0.554
KCTD17
Potassium channel tetramerization domain containing 17.
      
 0.547
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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