MYOD1 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

MYOD1

Myogenic differentiation 1. (318 aa)

Predicted Functional Partners:

TCF3

0.988

FBXO32

0.979

EP300

0.971

MEF2C

0.971

MEF2A

0.969

ENSPCAP00000010672

0.962

CREBBP

0.960

TCF12

0.925

TCF4

0.925

MYOG

0.924

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CREBBP	EP300	ENSPCAP00000013530	ENSPCAP00000011493	CREB binding protein.	E1A binding protein p300.	0.999
CREBBP	MEF2A	ENSPCAP00000013530	ENSPCAP00000012892	CREB binding protein.	Myocyte enhancer factor 2A.	0.696
CREBBP	MEF2C	ENSPCAP00000013530	ENSPCAP00000012078	CREB binding protein.	Myocyte enhancer factor 2C.	0.845
CREBBP	MYOD1	ENSPCAP00000013530	ENSPCAP00000001195	CREB binding protein.	Myogenic differentiation 1.	0.960
CREBBP	MYOG	ENSPCAP00000013530	ENSPCAP00000006373	CREB binding protein.	Myogenin.	0.469
CREBBP	TCF12	ENSPCAP00000013530	ENSPCAP00000002247	CREB binding protein.	Transcription factor 12.	0.816
CREBBP	TCF3	ENSPCAP00000013530	ENSPCAP00000000151	CREB binding protein.	Transcription factor 3.	0.968
CREBBP	TCF4	ENSPCAP00000013530	ENSPCAP00000009547	CREB binding protein.	Transcription factor 4.	0.816
ENSPCAP00000010672	EP300	ENSPCAP00000010672	ENSPCAP00000011493	annotation not available	E1A binding protein p300.	0.521
ENSPCAP00000010672	MYOD1	ENSPCAP00000010672	ENSPCAP00000001195	annotation not available	Myogenic differentiation 1.	0.962
ENSPCAP00000010672	MYOG	ENSPCAP00000010672	ENSPCAP00000006373	annotation not available	Myogenin.	0.805
ENSPCAP00000010672	TCF12	ENSPCAP00000010672	ENSPCAP00000002247	annotation not available	Transcription factor 12.	0.898
ENSPCAP00000010672	TCF3	ENSPCAP00000010672	ENSPCAP00000000151	annotation not available	Transcription factor 3.	0.976
ENSPCAP00000010672	TCF4	ENSPCAP00000010672	ENSPCAP00000009547	annotation not available	Transcription factor 4.	0.898
EP300	CREBBP	ENSPCAP00000011493	ENSPCAP00000013530	E1A binding protein p300.	CREB binding protein.	0.999
EP300	ENSPCAP00000010672	ENSPCAP00000011493	ENSPCAP00000010672	E1A binding protein p300.	annotation not available	0.521
EP300	MEF2A	ENSPCAP00000011493	ENSPCAP00000012892	E1A binding protein p300.	Myocyte enhancer factor 2A.	0.954
EP300	MEF2C	ENSPCAP00000011493	ENSPCAP00000012078	E1A binding protein p300.	Myocyte enhancer factor 2C.	0.943
EP300	MYOD1	ENSPCAP00000011493	ENSPCAP00000001195	E1A binding protein p300.	Myogenic differentiation 1.	0.971
EP300	MYOG	ENSPCAP00000011493	ENSPCAP00000006373	E1A binding protein p300.	Myogenin.	0.584