STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40Apre-mRNA processing factor 40 homolog A. (927 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 0.959
CCAR1
Cell division cycle and apoptosis regulator 1.
   
  0.897
PRPF40B
pre-mRNA processing factor 40 homolog B.
  
 
 
0.887
HTT
Huntingtin.
   
 0.867
SF1
Splicing factor 1.
   
 0.867
U2SURP
U2 snRNP associated SURP domain containing.
   
 
 0.860
RBM23
RNA binding motif protein 23.
   
  0.845
RBM39
RNA binding motif protein 39.
   
  0.845
ENSPCAP00000014868
annotation not available
    
 0.845
TPR
Translocated promoter region, nuclear basket protein.
   
  0.840
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.