STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40Apre-mRNA processing factor 40 homolog A. (927 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 0.999
SF3A1
Splicing factor 3a subunit 1.
   
 0.998
SF3B1
Splicing factor 3b subunit 1.
   
 0.995
SF3A2
Splicing factor 3a subunit 2.
    
 0.991
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.977
RBM23
RNA binding motif protein 23.
   
 0.974
RBM39
RNA binding motif protein 39.
   
 0.974
HTT
Huntingtin.
   
 0.970
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
   
 0.970
U2SURP
U2 snRNP associated SURP domain containing.
   
 
 0.969
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.