STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IKIK cytokine. (550 aa)    
Predicted Functional Partners:
PRPF6
pre-mRNA processing factor 6.
   
 0.998
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
   
 0.998
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 0.996
MFAP1
Microfibril associated protein 1.
   
 0.996
RNF113A
Ring finger protein 113A.
    
  0.996
SNIP1
Smad nuclear interacting protein 1.
    
  0.996
PRPF3
pre-mRNA processing factor 3.
   
  0.995
SF3B3
Splicing factor 3b subunit 3.
    
  0.992
SF3B1
Splicing factor 3b subunit 1.
   
 0.987
PRPF8
pre-mRNA processing factor 8.
    
 0.985
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.