MARCHF7 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MARCHF7

Membrane associated ring-CH-type finger 7. (704 aa)

Predicted Functional Partners:

USP7

0.950

UBE2K

0.948

ENSPCAP00000000081

0.926

TGFBR2

0.878

UBE2G2

0.717

UBE2D1

0.709

CNOT2

0.702

USP9X

0.696

USP40

0.690

UFD1

0.640

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT2	MARCHF7	ENSPCAP00000000915	ENSPCAP00000001243	CCR4-NOT transcription complex subunit 2.	Membrane associated ring-CH-type finger 7.	0.702
CNOT2	UBE2G2	ENSPCAP00000000915	ENSPCAP00000011066	CCR4-NOT transcription complex subunit 2.	Ubiquitin conjugating enzyme E2 G2.	0.955
CNOT2	UBE2K	ENSPCAP00000000915	ENSPCAP00000010793	CCR4-NOT transcription complex subunit 2.	Ubiquitin conjugating enzyme E2 K.	0.494
CNOT2	UFD1	ENSPCAP00000000915	ENSPCAP00000007455	CCR4-NOT transcription complex subunit 2.	Ubiquitin recognition factor in ER associated degradation 1.	0.763
ENSPCAP00000000081	MARCHF7	ENSPCAP00000000081	ENSPCAP00000001243	annotation not available	Membrane associated ring-CH-type finger 7.	0.926
ENSPCAP00000000081	UBE2D1	ENSPCAP00000000081	ENSPCAP00000006515	annotation not available	Ubiquitin conjugating enzyme E2 D1.	0.749
ENSPCAP00000000081	UBE2G2	ENSPCAP00000000081	ENSPCAP00000011066	annotation not available	Ubiquitin conjugating enzyme E2 G2.	0.769
ENSPCAP00000000081	UBE2K	ENSPCAP00000000081	ENSPCAP00000010793	annotation not available	Ubiquitin conjugating enzyme E2 K.	0.842
ENSPCAP00000000081	UFD1	ENSPCAP00000000081	ENSPCAP00000007455	annotation not available	Ubiquitin recognition factor in ER associated degradation 1.	0.464
ENSPCAP00000000081	USP40	ENSPCAP00000000081	ENSPCAP00000011704	annotation not available	Ubiquitin specific peptidase 40.	0.446
ENSPCAP00000000081	USP7	ENSPCAP00000000081	ENSPCAP00000009694	annotation not available	Ubiquitin specific peptidase 7.	0.577
MARCHF7	CNOT2	ENSPCAP00000001243	ENSPCAP00000000915	Membrane associated ring-CH-type finger 7.	CCR4-NOT transcription complex subunit 2.	0.702
MARCHF7	ENSPCAP00000000081	ENSPCAP00000001243	ENSPCAP00000000081	Membrane associated ring-CH-type finger 7.	annotation not available	0.926
MARCHF7	TGFBR2	ENSPCAP00000001243	ENSPCAP00000009312	Membrane associated ring-CH-type finger 7.	Transforming growth factor beta receptor 2.	0.878
MARCHF7	UBE2D1	ENSPCAP00000001243	ENSPCAP00000006515	Membrane associated ring-CH-type finger 7.	Ubiquitin conjugating enzyme E2 D1.	0.709
MARCHF7	UBE2G2	ENSPCAP00000001243	ENSPCAP00000011066	Membrane associated ring-CH-type finger 7.	Ubiquitin conjugating enzyme E2 G2.	0.717
MARCHF7	UBE2K	ENSPCAP00000001243	ENSPCAP00000010793	Membrane associated ring-CH-type finger 7.	Ubiquitin conjugating enzyme E2 K.	0.948
MARCHF7	UFD1	ENSPCAP00000001243	ENSPCAP00000007455	Membrane associated ring-CH-type finger 7.	Ubiquitin recognition factor in ER associated degradation 1.	0.640
MARCHF7	USP40	ENSPCAP00000001243	ENSPCAP00000011704	Membrane associated ring-CH-type finger 7.	Ubiquitin specific peptidase 40.	0.690
MARCHF7	USP7	ENSPCAP00000001243	ENSPCAP00000009694	Membrane associated ring-CH-type finger 7.	Ubiquitin specific peptidase 7.	0.950