PATE2 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PATE2

Prostate and testis expressed 2. (95 aa)

Predicted Functional Partners:

ENSPCAP00000011039

0.588

GLB1L

0.522

RNASE13

0.503

ENSPCAP00000008900

0.499

ENSPCAP00000002684

0.495

ENSPCAP00000007384

0.494

ENSPCAP00000012925

0.482

ERICH4

0.433

ENSPCAP00000000356

0.414

ENSPCAP00000013772

0.414

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000000356	PATE2	ENSPCAP00000000356	ENSPCAP00000001260	annotation not available	Prostate and testis expressed 2.	0.414
ENSPCAP00000002684	ENSPCAP00000008900	ENSPCAP00000002684	ENSPCAP00000008900	annotation not available	annotation not available	0.413
ENSPCAP00000002684	PATE2	ENSPCAP00000002684	ENSPCAP00000001260	annotation not available	Prostate and testis expressed 2.	0.495
ENSPCAP00000007384	ENSPCAP00000008900	ENSPCAP00000007384	ENSPCAP00000008900	annotation not available	annotation not available	0.412
ENSPCAP00000007384	PATE2	ENSPCAP00000007384	ENSPCAP00000001260	annotation not available	Prostate and testis expressed 2.	0.494
ENSPCAP00000008900	ENSPCAP00000002684	ENSPCAP00000008900	ENSPCAP00000002684	annotation not available	annotation not available	0.413
ENSPCAP00000008900	ENSPCAP00000007384	ENSPCAP00000008900	ENSPCAP00000007384	annotation not available	annotation not available	0.412
ENSPCAP00000008900	PATE2	ENSPCAP00000008900	ENSPCAP00000001260	annotation not available	Prostate and testis expressed 2.	0.499
ENSPCAP00000011039	PATE2	ENSPCAP00000011039	ENSPCAP00000001260	annotation not available	Prostate and testis expressed 2.	0.588
ENSPCAP00000011039	RNASE13	ENSPCAP00000011039	ENSPCAP00000013123	annotation not available	Ribonuclease A family member 13 (inactive).	0.503
ENSPCAP00000012925	PATE2	ENSPCAP00000012925	ENSPCAP00000001260	annotation not available	Prostate and testis expressed 2.	0.482
ENSPCAP00000013772	PATE2	ENSPCAP00000013772	ENSPCAP00000001260	annotation not available	Prostate and testis expressed 2.	0.414
ERICH4	PATE2	ENSPCAP00000005636	ENSPCAP00000001260	Glutamate rich 4.	Prostate and testis expressed 2.	0.433
GLB1L	PATE2	ENSPCAP00000002246	ENSPCAP00000001260	Galactosidase beta 1 like.	Prostate and testis expressed 2.	0.522
PATE2	ENSPCAP00000000356	ENSPCAP00000001260	ENSPCAP00000000356	Prostate and testis expressed 2.	annotation not available	0.414
PATE2	ENSPCAP00000002684	ENSPCAP00000001260	ENSPCAP00000002684	Prostate and testis expressed 2.	annotation not available	0.495
PATE2	ENSPCAP00000007384	ENSPCAP00000001260	ENSPCAP00000007384	Prostate and testis expressed 2.	annotation not available	0.494
PATE2	ENSPCAP00000008900	ENSPCAP00000001260	ENSPCAP00000008900	Prostate and testis expressed 2.	annotation not available	0.499
PATE2	ENSPCAP00000011039	ENSPCAP00000001260	ENSPCAP00000011039	Prostate and testis expressed 2.	annotation not available	0.588
PATE2	ENSPCAP00000012925	ENSPCAP00000001260	ENSPCAP00000012925	Prostate and testis expressed 2.	annotation not available	0.482