ENSPCAP00000001318 protein (Procavia capensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPCAP00000001318

annotation not available (623 aa)

Predicted Functional Partners:

ENSPCAP00000014236

0.967

ENSPCAP00000014229

0.909

ENSPCAP00000003113

0.823

ENSPCAP00000011856

0.789

ENSPCAP00000002817

0.745

ENSPCAP00000008170

0.737

ENSPCAP00000008559

0.737

FREM1

0.737

ENSPCAP00000013862

0.732

LRRC15

0.728

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000001318	ENSPCAP00000002817	ENSPCAP00000001318	ENSPCAP00000002817	annotation not available	annotation not available	0.745
ENSPCAP00000001318	ENSPCAP00000003113	ENSPCAP00000001318	ENSPCAP00000003113	annotation not available	annotation not available	0.823
ENSPCAP00000001318	ENSPCAP00000008170	ENSPCAP00000001318	ENSPCAP00000008170	annotation not available	annotation not available	0.737
ENSPCAP00000001318	ENSPCAP00000008559	ENSPCAP00000001318	ENSPCAP00000008559	annotation not available	annotation not available	0.737
ENSPCAP00000001318	ENSPCAP00000011856	ENSPCAP00000001318	ENSPCAP00000011856	annotation not available	annotation not available	0.789
ENSPCAP00000001318	ENSPCAP00000013862	ENSPCAP00000001318	ENSPCAP00000013862	annotation not available	annotation not available	0.732
ENSPCAP00000001318	ENSPCAP00000014229	ENSPCAP00000001318	ENSPCAP00000014229	annotation not available	annotation not available	0.909
ENSPCAP00000001318	ENSPCAP00000014236	ENSPCAP00000001318	ENSPCAP00000014236	annotation not available	annotation not available	0.967
ENSPCAP00000001318	FREM1	ENSPCAP00000001318	ENSPCAP00000014424	annotation not available	FRAS1 related extracellular matrix 1.	0.737
ENSPCAP00000001318	LRRC15	ENSPCAP00000001318	ENSPCAP00000007750	annotation not available	Leucine rich repeat containing 15.	0.728
ENSPCAP00000002817	ENSPCAP00000001318	ENSPCAP00000002817	ENSPCAP00000001318	annotation not available	annotation not available	0.745
ENSPCAP00000002817	ENSPCAP00000008170	ENSPCAP00000002817	ENSPCAP00000008170	annotation not available	annotation not available	0.910
ENSPCAP00000002817	ENSPCAP00000008559	ENSPCAP00000002817	ENSPCAP00000008559	annotation not available	annotation not available	0.752
ENSPCAP00000002817	ENSPCAP00000013862	ENSPCAP00000002817	ENSPCAP00000013862	annotation not available	annotation not available	0.788
ENSPCAP00000002817	ENSPCAP00000014236	ENSPCAP00000002817	ENSPCAP00000014236	annotation not available	annotation not available	0.489
ENSPCAP00000002817	FREM1	ENSPCAP00000002817	ENSPCAP00000014424	annotation not available	FRAS1 related extracellular matrix 1.	0.951
ENSPCAP00000002817	LRRC15	ENSPCAP00000002817	ENSPCAP00000007750	annotation not available	Leucine rich repeat containing 15.	0.552
ENSPCAP00000003113	ENSPCAP00000001318	ENSPCAP00000003113	ENSPCAP00000001318	annotation not available	annotation not available	0.823
ENSPCAP00000003113	ENSPCAP00000008559	ENSPCAP00000003113	ENSPCAP00000008559	annotation not available	annotation not available	0.658
ENSPCAP00000003113	LRRC15	ENSPCAP00000003113	ENSPCAP00000007750	annotation not available	Leucine rich repeat containing 15.	0.485