STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LDLRLow density lipoprotein receptor. (858 aa)    
Predicted Functional Partners:
APOB
Apolipoprotein B.
    
 0.999
MYLIP
Myosin regulatory light chain interacting protein.
    
 0.997
LDLRAP1
Low density lipoprotein receptor adaptor protein 1.
    
 0.994
PCSK9
Proprotein convertase subtilisin/kexin type 9.
    
 0.993
LPL
Lipoprotein lipase.
    
 0.977
DAB1
DAB adaptor protein 1.
    
 0.976
CETP
Cholesteryl ester transfer protein.
   
 
 0.975
RELN
Reelin.
    
 0.975
ENSPCAP00000011183
annotation not available
    
 0.973
APOC3
Apolipoprotein C3.
    
 0.972
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.