ONECUT1 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ONECUT1

One cut homeobox 1. (466 aa)

Predicted Functional Partners:

FECH

0.848

ENSPCAP00000015222

0.847

CCNG2

0.821

ENSPCAP00000013779

0.702

ORC3

0.694

FAM214A

0.692

CEBPE

0.671

ENSPCAP00000013345

0.653

ZBTB14

0.610

HNF1A

0.608

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNG2	ENSPCAP00000015222	ENSPCAP00000003182	ENSPCAP00000015222	Cyclin G2.	annotation not available	0.660
CCNG2	FECH	ENSPCAP00000003182	ENSPCAP00000004421	Cyclin G2.	Ferrochelatase.	0.661
CCNG2	ONECUT1	ENSPCAP00000003182	ENSPCAP00000001387	Cyclin G2.	One cut homeobox 1.	0.821
CCNG2	ORC3	ENSPCAP00000003182	ENSPCAP00000013413	Cyclin G2.	Origin recognition complex subunit 3.	0.481
CEBPE	ENSPCAP00000013779	ENSPCAP00000014010	ENSPCAP00000013779	CCAAT enhancer binding protein epsilon.	annotation not available	0.629
CEBPE	ONECUT1	ENSPCAP00000014010	ENSPCAP00000001387	CCAAT enhancer binding protein epsilon.	One cut homeobox 1.	0.671
ENSPCAP00000013345	ENSPCAP00000013779	ENSPCAP00000013345	ENSPCAP00000013779	annotation not available	annotation not available	0.840
ENSPCAP00000013345	HNF1A	ENSPCAP00000013345	ENSPCAP00000012044	annotation not available	HNF1 homeobox A.	0.581
ENSPCAP00000013345	ONECUT1	ENSPCAP00000013345	ENSPCAP00000001387	annotation not available	One cut homeobox 1.	0.653
ENSPCAP00000013779	CEBPE	ENSPCAP00000013779	ENSPCAP00000014010	annotation not available	CCAAT enhancer binding protein epsilon.	0.629
ENSPCAP00000013779	ENSPCAP00000013345	ENSPCAP00000013779	ENSPCAP00000013345	annotation not available	annotation not available	0.840
ENSPCAP00000013779	HNF1A	ENSPCAP00000013779	ENSPCAP00000012044	annotation not available	HNF1 homeobox A.	0.740
ENSPCAP00000013779	ONECUT1	ENSPCAP00000013779	ENSPCAP00000001387	annotation not available	One cut homeobox 1.	0.702
ENSPCAP00000013779	ZBTB14	ENSPCAP00000013779	ENSPCAP00000007987	annotation not available	Zinc finger and BTB domain containing 14.	0.640
ENSPCAP00000015222	CCNG2	ENSPCAP00000015222	ENSPCAP00000003182	annotation not available	Cyclin G2.	0.660
ENSPCAP00000015222	FAM214A	ENSPCAP00000015222	ENSPCAP00000007322	annotation not available	Family with sequence similarity 214 member A.	0.692
ENSPCAP00000015222	FECH	ENSPCAP00000015222	ENSPCAP00000004421	annotation not available	Ferrochelatase.	0.588
ENSPCAP00000015222	ONECUT1	ENSPCAP00000015222	ENSPCAP00000001387	annotation not available	One cut homeobox 1.	0.847
FAM214A	ENSPCAP00000015222	ENSPCAP00000007322	ENSPCAP00000015222	Family with sequence similarity 214 member A.	annotation not available	0.692
FAM214A	ONECUT1	ENSPCAP00000007322	ENSPCAP00000001387	Family with sequence similarity 214 member A.	One cut homeobox 1.	0.692