ENSPCAP00000001397 protein (Procavia capensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPCAP00000001397

annotation not available (328 aa)

Predicted Functional Partners:

APP

0.690

XRCC6

0.687

C1S

0.624

APOA2

0.607

VTN

0.605

APOA1

0.605

APOB

0.601

ENSPCAP00000009812

0.600

AHSG

0.596

ENSPCAP00000013510

0.589

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHSG	APOA2	ENSPCAP00000003331	ENSPCAP00000012915	Alpha 2-HS glycoprotein.	Apolipoprotein A2.	0.959
AHSG	APOB	ENSPCAP00000003331	ENSPCAP00000003763	Alpha 2-HS glycoprotein.	Apolipoprotein B.	0.937
AHSG	APP	ENSPCAP00000003331	ENSPCAP00000012953	Alpha 2-HS glycoprotein.	Amyloid beta precursor protein.	0.478
AHSG	C1S	ENSPCAP00000003331	ENSPCAP00000015395	Alpha 2-HS glycoprotein.	Complement C1s.	0.615
AHSG	ENSPCAP00000001397	ENSPCAP00000003331	ENSPCAP00000001397	Alpha 2-HS glycoprotein.	annotation not available	0.596
AHSG	ENSPCAP00000009812	ENSPCAP00000003331	ENSPCAP00000009812	Alpha 2-HS glycoprotein.	annotation not available	0.784
AHSG	ENSPCAP00000013510	ENSPCAP00000003331	ENSPCAP00000013510	Alpha 2-HS glycoprotein.	annotation not available	0.705
AHSG	VTN	ENSPCAP00000003331	ENSPCAP00000000820	Alpha 2-HS glycoprotein.	Vitronectin.	0.401
AHSG	XRCC6	ENSPCAP00000003331	ENSPCAP00000014006	Alpha 2-HS glycoprotein.	X-ray repair cross complementing 6.	0.513
APOA1	APOA2	ENSPCAP00000001437	ENSPCAP00000012915	Apolipoprotein A1.	Apolipoprotein A2.	0.966
APOA1	APOB	ENSPCAP00000001437	ENSPCAP00000003763	Apolipoprotein A1.	Apolipoprotein B.	0.986
APOA1	ENSPCAP00000001397	ENSPCAP00000001437	ENSPCAP00000001397	Apolipoprotein A1.	annotation not available	0.605
APOA1	ENSPCAP00000009812	ENSPCAP00000001437	ENSPCAP00000009812	Apolipoprotein A1.	annotation not available	0.952
APOA2	AHSG	ENSPCAP00000012915	ENSPCAP00000003331	Apolipoprotein A2.	Alpha 2-HS glycoprotein.	0.959
APOA2	APOA1	ENSPCAP00000012915	ENSPCAP00000001437	Apolipoprotein A2.	Apolipoprotein A1.	0.966
APOA2	APOB	ENSPCAP00000012915	ENSPCAP00000003763	Apolipoprotein A2.	Apolipoprotein B.	0.998
APOA2	APP	ENSPCAP00000012915	ENSPCAP00000012953	Apolipoprotein A2.	Amyloid beta precursor protein.	0.843
APOA2	ENSPCAP00000001397	ENSPCAP00000012915	ENSPCAP00000001397	Apolipoprotein A2.	annotation not available	0.607
APOA2	ENSPCAP00000009812	ENSPCAP00000012915	ENSPCAP00000009812	Apolipoprotein A2.	annotation not available	0.997
APOA2	VTN	ENSPCAP00000012915	ENSPCAP00000000820	Apolipoprotein A2.	Vitronectin.	0.429