STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VCPKMTValosin containing protein lysine methyltransferase. (225 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
    
 0.980
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 0.863
ENSPCAP00000013714
annotation not available
    
 0.863
UBXN6
UBX domain protein 6.
    
 
 0.683
ENSPCAP00000007370
annotation not available
    
  0.587
NVL
Nuclear VCP like.
   
  0.586
ENSPCAP00000001332
annotation not available
   
 
 0.568
ATAD1
ATPase family AAA domain containing 1.
    
  0.557
FIGN
Fidgetin, microtubule severing factor.
    
  0.557
SPAST
Spastin.
    
  0.557
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.