STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VCPKMTValosin containing protein lysine methyltransferase. (225 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
   
 0.996
UBXN6
UBX domain protein 6.
    
 
 0.960
SPATA5L1
Spermatogenesis associated 5 like 1.
   
 0.855
ENSPCAP00000013714
annotation not available
   
 0.855
ENSPCAP00000001332
annotation not available
   
 
 0.657
ENSPCAP00000005763
annotation not available
   
  
 0.633
METTL18
Methyltransferase like 18.
   
  
 0.625
EEF1AKMT1
EEF1A lysine methyltransferase 1.
   
  
 0.603
EEF1AKNMT
eEF1A lysine and N-terminal methyltransferase.
      
 0.568
C7orf26
Chromosome 7 open reading frame 26.
      
 0.568
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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