STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THUMPD1THUMP domain containing 1. (282 aa)    
Predicted Functional Partners:
NAT10
N-acetyltransferase 10.
   
 0.986
TRUB1
TruB pseudouridine synthase family member 1.
   
 
 0.917
DUS2
Dihydrouridine synthase 2.
  
 
 0.902
FDXACB1
Ferredoxin-fold anticodon binding domain containing 1.
  
   0.883
MAF1
MAF1 homolog, negative regulator of RNA polymerase III.
    
 
 0.846
TRMT1
tRNA methyltransferase 1.
   
 
 0.826
TRMT1L
tRNA methyltransferase 1 like.
   
 
 0.826
PUS7
Pseudouridine synthase 7.
   
 
 0.792
DKC1
Dyskerin pseudouridine synthase 1.
   
 
 0.728
RRP15
Ribosomal RNA processing 15 homolog.
   
    0.693
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.