Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAMD1Sterile alpha motif domain containing 1. (287 aa)    
Predicted Functional Partners:
RUVBL1
RuvB like AAA ATPase 1.
   
 0.742
MEAF6
MYST/Esa1 associated factor 6.
    
 0.725
TRRAP
Transformation/transcription domain associated protein.
    
 0.725
DMAP1
DNA methyltransferase 1 associated protein 1.
   
 0.707
ARID4A
AT-rich interaction domain 4A.
   
 0.669
ENSPCAP00000003739
annotation not available
   
 0.669
ENSPCAP00000010168
annotation not available
    
 0.668
MRGBP
MRG domain binding protein.
    
 0.664
RUVBL2
RuvB like AAA ATPase 2.
    
 0.662
MCRS1
Microspherule protein 1.
    
 0.651
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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