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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX1DEAD-box helicase 1. (739 aa)    
Predicted Functional Partners:
RTRAF
RNA transcription, translation and transport factor.
   
 0.985
RTCB
RNA 2',3'-cyclic phosphate and 5'-OH ligase.
   
 0.981
FAM98B
Family with sequence similarity 98 member B.
    
 0.949
C2orf49
Chromosome 2 open reading frame 49.
    
 0.913
FAM98C
Family with sequence similarity 98 member C.
   
 
 0.809
DHX15
DEAH-box helicase 15.
  
 0.793
SF3B1
Splicing factor 3b subunit 1.
   
 0.781
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
  
 0.778
SF3B3
Splicing factor 3b subunit 3.
    
 0.770
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.766
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.