STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A6Collagen type VI alpha 6 chain. (2241 aa)    
Predicted Functional Partners:
CD44
CD44 molecule (Indian blood group).
    
 0.890
ITGA9
Integrin subunit alpha 9.
    
 0.851
ITGA6
Integrin subunit alpha 6.
    
 0.833
ITGB4
Integrin subunit beta 4.
    
 0.821
ITGB6
Integrin subunit beta 6.
    
 0.821
ITGB8
Integrin subunit beta 8.
    
 0.819
ITGA8
Integrin subunit alpha 8.
    
 0.817
ENSPCAP00000013862
annotation not available
    
 0.812
ENSPCAP00000005989
annotation not available
    
 0.810
ITGA11
Integrin subunit alpha 11.
    
 0.808
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.