TTC8 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TTC8

Tetratricopeptide repeat domain 8. (503 aa)

Predicted Functional Partners:

ENSPCAP00000002101

0.999

ENSPCAP00000010752

0.999

ENSPCAP00000014739

0.999

BBS9

0.999

ENSPCAP00000016097

0.999

BBS4

0.997

KLHL41

0.995

ENSPCAP00000009119

0.993

ENSPCAP00000013254

0.993

NME3

0.931

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS4	BBS9	ENSPCAP00000006415	ENSPCAP00000015412	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 9.	0.999
BBS4	ENSPCAP00000002101	ENSPCAP00000006415	ENSPCAP00000002101	Bardet-Biedl syndrome 4.	annotation not available	0.999
BBS4	ENSPCAP00000009119	ENSPCAP00000006415	ENSPCAP00000009119	Bardet-Biedl syndrome 4.	annotation not available	0.987
BBS4	ENSPCAP00000010752	ENSPCAP00000006415	ENSPCAP00000010752	Bardet-Biedl syndrome 4.	annotation not available	0.999
BBS4	ENSPCAP00000013254	ENSPCAP00000006415	ENSPCAP00000013254	Bardet-Biedl syndrome 4.	annotation not available	0.994
BBS4	ENSPCAP00000014739	ENSPCAP00000006415	ENSPCAP00000014739	Bardet-Biedl syndrome 4.	annotation not available	0.999
BBS4	ENSPCAP00000016097	ENSPCAP00000006415	ENSPCAP00000016097	Bardet-Biedl syndrome 4.	annotation not available	0.999
BBS4	KLHL41	ENSPCAP00000006415	ENSPCAP00000014790	Bardet-Biedl syndrome 4.	Kelch like family member 41.	0.984
BBS4	NME3	ENSPCAP00000006415	ENSPCAP00000006547	Bardet-Biedl syndrome 4.	NME/NM23 nucleoside diphosphate kinase 3.	0.922
BBS4	TTC8	ENSPCAP00000006415	ENSPCAP00000001529	Bardet-Biedl syndrome 4.	Tetratricopeptide repeat domain 8.	0.997
BBS9	BBS4	ENSPCAP00000015412	ENSPCAP00000006415	Bardet-Biedl syndrome 9.	Bardet-Biedl syndrome 4.	0.999
BBS9	ENSPCAP00000002101	ENSPCAP00000015412	ENSPCAP00000002101	Bardet-Biedl syndrome 9.	annotation not available	0.999
BBS9	ENSPCAP00000009119	ENSPCAP00000015412	ENSPCAP00000009119	Bardet-Biedl syndrome 9.	annotation not available	0.992
BBS9	ENSPCAP00000010752	ENSPCAP00000015412	ENSPCAP00000010752	Bardet-Biedl syndrome 9.	annotation not available	0.999
BBS9	ENSPCAP00000013254	ENSPCAP00000015412	ENSPCAP00000013254	Bardet-Biedl syndrome 9.	annotation not available	0.988
BBS9	ENSPCAP00000014739	ENSPCAP00000015412	ENSPCAP00000014739	Bardet-Biedl syndrome 9.	annotation not available	0.999
BBS9	ENSPCAP00000016097	ENSPCAP00000015412	ENSPCAP00000016097	Bardet-Biedl syndrome 9.	annotation not available	0.999
BBS9	KLHL41	ENSPCAP00000015412	ENSPCAP00000014790	Bardet-Biedl syndrome 9.	Kelch like family member 41.	0.995
BBS9	NME3	ENSPCAP00000015412	ENSPCAP00000006547	Bardet-Biedl syndrome 9.	NME/NM23 nucleoside diphosphate kinase 3.	0.883
BBS9	TTC8	ENSPCAP00000015412	ENSPCAP00000001529	Bardet-Biedl syndrome 9.	Tetratricopeptide repeat domain 8.	0.999