TSACC protein (Procavia capensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

TSACC

TSSK6 activating cochaperone. (112 aa)

Predicted Functional Partners:

FOXP2

0.672

ARMH4

0.657

NUPR2

0.575

GNGT2

0.572

ENSPCAP00000012694

0.564

CATSPERG

0.563

ENSPCAP00000015761

0.562

ENSPCAP00000002665

0.561

SPATA16

0.535

ENSPCAP00000012615

0.491

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMH4	ENSPCAP00000002665	ENSPCAP00000008663	ENSPCAP00000002665	Armadillo like helical domain containing 4.	annotation not available	0.552
ARMH4	ENSPCAP00000012694	ENSPCAP00000008663	ENSPCAP00000012694	Armadillo like helical domain containing 4.	annotation not available	0.564
ARMH4	TSACC	ENSPCAP00000008663	ENSPCAP00000001558	Armadillo like helical domain containing 4.	TSSK6 activating cochaperone.	0.657
CATSPERG	SPATA16	ENSPCAP00000005783	ENSPCAP00000013581	Cation channel sperm associated auxiliary subunit gamma.	Spermatogenesis associated 16.	0.459
CATSPERG	TSACC	ENSPCAP00000005783	ENSPCAP00000001558	Cation channel sperm associated auxiliary subunit gamma.	TSSK6 activating cochaperone.	0.563
ENSPCAP00000002665	ARMH4	ENSPCAP00000002665	ENSPCAP00000008663	annotation not available	Armadillo like helical domain containing 4.	0.552
ENSPCAP00000002665	TSACC	ENSPCAP00000002665	ENSPCAP00000001558	annotation not available	TSSK6 activating cochaperone.	0.561
ENSPCAP00000012615	TSACC	ENSPCAP00000012615	ENSPCAP00000001558	annotation not available	TSSK6 activating cochaperone.	0.491
ENSPCAP00000012694	ARMH4	ENSPCAP00000012694	ENSPCAP00000008663	annotation not available	Armadillo like helical domain containing 4.	0.564
ENSPCAP00000012694	TSACC	ENSPCAP00000012694	ENSPCAP00000001558	annotation not available	TSSK6 activating cochaperone.	0.564
ENSPCAP00000015761	TSACC	ENSPCAP00000015761	ENSPCAP00000001558	annotation not available	TSSK6 activating cochaperone.	0.562
FOXP2	TSACC	ENSPCAP00000004988	ENSPCAP00000001558	Forkhead box P2.	TSSK6 activating cochaperone.	0.672
GNGT2	TSACC	ENSPCAP00000000183	ENSPCAP00000001558	G protein subunit gamma transducin 2.	TSSK6 activating cochaperone.	0.572
NUPR2	TSACC	ENSPCAP00000005474	ENSPCAP00000001558	Nuclear protein 2, transcriptional regulator.	TSSK6 activating cochaperone.	0.575
SPATA16	CATSPERG	ENSPCAP00000013581	ENSPCAP00000005783	Spermatogenesis associated 16.	Cation channel sperm associated auxiliary subunit gamma.	0.459
SPATA16	TSACC	ENSPCAP00000013581	ENSPCAP00000001558	Spermatogenesis associated 16.	TSSK6 activating cochaperone.	0.535
TSACC	ARMH4	ENSPCAP00000001558	ENSPCAP00000008663	TSSK6 activating cochaperone.	Armadillo like helical domain containing 4.	0.657
TSACC	CATSPERG	ENSPCAP00000001558	ENSPCAP00000005783	TSSK6 activating cochaperone.	Cation channel sperm associated auxiliary subunit gamma.	0.563
TSACC	ENSPCAP00000002665	ENSPCAP00000001558	ENSPCAP00000002665	TSSK6 activating cochaperone.	annotation not available	0.561
TSACC	ENSPCAP00000012615	ENSPCAP00000001558	ENSPCAP00000012615	TSSK6 activating cochaperone.	annotation not available	0.491