STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRRTSerrate, RNA effector molecule. (880 aa)    
Predicted Functional Partners:
NCBP2
Nuclear cap binding protein subunit 2.
    
 0.998
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.996
ALYREF
Aly/REF export factor.
   
 0.995
MTREX
Mtr4 exosome RNA helicase.
   
 0.991
ZC3H18
Zinc finger CCCH-type containing 18.
   
 0.986
PHAX
Phosphorylated adaptor for RNA export.
   
 0.975
ZFC3H1
Zinc finger C3H1-type containing.
    
 0.966
RBM25
RNA binding motif protein 25.
   
 
 0.950
PRPF40A
pre-mRNA processing factor 40 homolog A.
   
 0.946
DHX9
DExH-box helicase 9.
   
  0.942
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.